Transcript: lnc-TLE1-1:4

Basic information

LNCipedia transcript ID: lnc-TLE1-1:4 
LNCipedia gene ID: lnc-TLE1-1
Ensembl Gene ID: ENSG00000230846
Ensembl Transcript ID: ENST00000427387
Location (hg38): chr9:81928021-81931368
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 465 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427387; ENST00000427387.1; RP11-383M4.2-001; OTTHUMT00000052811.1; NONHSAT132663
Alternative gene names: ENSG00000230846; RP11-383M4.2; ENSG00000230846.1; OTTHUMG00000020086.1; AL158154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.9924 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLE1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75B-1:1
3.1 lnc-FAM75B-1:1
4.0 lnc-FAM75B-1:1
4.1 lnc-FAM75B-1:1
5.0 lnc-FAM75B-1:1
5.1 lnc-SEMA4D-103:3
5.2 lnc-TLE1-1:4