Transcript: lnc-TLE1-15:1

Basic information

LNCipedia transcript ID: lnc-TLE1-15:1 
LNCipedia gene ID: lnc-TLE1-15
Ensembl Gene ID: ENSG00000232494
Ensembl Transcript ID: ENST00000448475
Location (hg38): chr9:79874696-79886678
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015838; ENST00000448475; ENST00000448475.1; RP11-403N16.2-001; OTTHUMT00000052798.1; NONHSAT132513
Alternative gene names: XLOC_007749; linc-GNAQ-3; ENSG00000232494; RP11-403N16.2; ENSG00000232494.1; OTTHUMG00000020074.1; AL161912.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0982 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLE1-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TLE1-2:1
3.1 lnc-TLE1-2:1
4.0 lnc-TLE1-2:1
4.1 lnc-TLE1-2:1
5.0 lnc-TLE1-2:1
5.1 lnc-ALDH1A1-42:1
5.2 lnc-TLE1-15:1