Transcript: lnc-TKT-3:7

Basic information

LNCipedia transcript ID: lnc-TKT-3:7 
LNCipedia gene ID: lnc-TKT-3
Location (hg38): chr3:53287366-53288361
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 592 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000558034.1; DCP1A-007; OTTHUMT00000416391.1
Alternative gene names: ENSG00000162290.11; DCP1A; OTTHUMG00000158193.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1043.8494 coding 
CPAT coding probability 52.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TKT-3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TKT-1:7
4.0 lnc-TKT-1:7
4.1 lnc-TKT-1:7
5.0 lnc-TKT-1:7
5.1 lnc-ACTR8-6:7
5.2 lnc-TKT-3:7