Transcript: lnc-TKT-3:1

Basic information

LNCipedia transcript ID: lnc-TKT-3:1 
LNCipedia gene ID: lnc-TKT-3
Location (hg38): chr3:53292633-53347586
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 849 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000560624.1; DCP1A-009; OTTHUMT00000416392.1
Alternative gene names: ENSG00000162290.11; DCP1A; OTTHUMG00000158193.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -144.8033 non-coding 
CPAT coding probability 99.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TKT-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TKT-1:2
4.0 lnc-TKT-1:2
4.1 lnc-TKT-1:2
5.0 lnc-TKT-1:2
5.1 lnc-ACTR8-6:1
5.2 lnc-TKT-3:1