Transcript: lnc-TINCR-1:1

Basic information

LNCipedia transcript ID: lnc-TINCR-1:1 
LNCipedia gene ID: lnc-TINCR-1
RefSeq ID: NR_027064
Location (hg38): chr19:5558167-5568034
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3733 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000448587; ENST00000448587.1; PLAC2-001; OTTHUMT00000317918.1; ENST00000448587.5; NR_027064.2
Alternative gene names: ENSG00000223573; PLAC2; ENSG00000223573.1; OTTHUMG00000150390.1; ENSG00000223573.2; TINCR; ENSG00000223573.6; FLJ90734; NCRNA00036; LINC00036; onco-lncRNA-16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 500.4199 coding 
CPAT coding probability 32.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TINCR-1:1 no no no no

Available literature

  1. Jiang (2015), The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression., Cell Rep
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature
  3. Lopez-Pajares (2015), A LncRNA-MAF:MAFB transcription factor network regulates epidermal differentiation., Dev. Cell
  4. Sun (2015), CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation., Genes Dev.
  5. Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int
  6. Xu (2015), SP1-induced upregulation of the long noncoding RNA TINCR regulates cell proliferation and apoptosis by affecting KLF2 mRNA stability in gastric cancer., Oncogene
  7. Li (2014), Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms., J. Invest. Dermatol.
  8. Li (2014), [Long noncoding RNAs in gene expression control]., Zhong Nan Da Xue Xue Bao Yi Xue Ban
  9. Kretz (2013), Control of somatic tissue differentiation by the long non-coding RNA TINCR., Nature
  10. Kretz (2013), TINCR, staufen1, and cellular differentiation., RNA Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SAFB2-1:1
3.1 lnc-SAFB2-1:1
4.0 TINCR:1
4.1 TINCR:1
5.0 TINCR:1
5.1 lnc-TIMM44-72:1
5.2 lnc-TINCR-1:1