Transcript: lnc-TIGD7-2:1

Basic information

LNCipedia transcript ID: lnc-TIGD7-2:1 
LNCipedia gene ID: lnc-TIGD7-2
Ensembl Gene ID: ENSG00000262899
Ensembl Transcript ID: ENST00000574245
Location (hg38): chr16:3307573-3308393
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574245.1; LA16c-360H6.3-001; OTTHUMT00000437582.1; NONHSAT148032
Alternative gene names: ENSG00000262899.1; LA16c-360H6.3; OTTHUMG00000177557.1; AC004232.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.2561 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIGD7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIGD7-1:1
4.0 lnc-TIGD7-2:1
4.1 lnc-TIGD7-2:1
5.0 lnc-TIGD7-2:1
5.1 lnc-PKMYT1-31:1
5.2 lnc-TIGD7-2:1