Transcript: lnc-THAP7-20:2

Basic information

LNCipedia transcript ID: lnc-THAP7-20:2 
LNCipedia gene ID: lnc-THAP7-20
Ensembl Gene ID: ENSG00000161149
Ensembl Transcript ID: ENST00000422086
Location (hg38): chr22:21008193-21014287
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1974 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422086.5
Alternative gene names: ENSG00000161149.12; TUBA3FP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 675.1129 coding 
CPAT coding probability 94.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-THAP7-20:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SCARF2-20:2
5.1 lnc-SCARF2-20:2
5.2 lnc-THAP7-20:2