Transcript: lnc-TGS1-1:1

Basic information

LNCipedia transcript ID: lnc-TGS1-1:1 
LNCipedia gene ID: lnc-TGS1-1
Location (hg38): chr8:55893595-55895717
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 651 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000518552.1; RP11-318K15.2-001; OTTHUMT00000378160.1
Alternative gene names: ENSG00000254325.1; RP11-318K15.2; OTTHUMG00000164295.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.8131 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGS1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGS1-1:1
4.0 lnc-TGS1-1:1
4.1 lnc-TGS1-1:1
5.0 lnc-TGS1-1:1
5.1 lnc-SDCBP-45:1
5.2 lnc-TGS1-1:1