Transcript: lnc-TGFBRAP1-2:2

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-2:2 
LNCipedia gene ID: lnc-TGFBRAP1-2
Location (hg38): chr2:105194336-105196474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005222
Alternative gene names: XLOC_002244; linc-MFSD9-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.3775 non-coding 
CPAT coding probability 43.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBRAP1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-2:2
3.1 lnc-TGFBRAP1-2:2
4.0 lnc-TGFBRAP1-2:2
4.1 lnc-TGFBRAP1-2:2
5.0 lnc-TGFBRAP1-2:2
5.1 lnc-AFF3-76:2
5.2 lnc-TGFBRAP1-2:2