Transcript: lnc-TGFB3-2:1

Basic information

LNCipedia transcript ID: lnc-TGFB3-2:1 
LNCipedia gene ID: lnc-TGFB3-2
Location (hg38): chr14:76154187-76206885
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 617 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000553767.1; RP11-361H10.2-001; OTTHUMT00000413704.1; NONHSAT037888
Alternative gene names: ENSG00000258756.1; RP11-361H10.2; OTTHUMG00000171491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.6436 non-coding 
CPAT coding probability 19.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFB3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFB3-2:1
4.0 lnc-TGFB3-2:1
4.1 lnc-TGFB3-2:1
5.0 lnc-TGFB3-2:1
5.1 lnc-PROX2-24:1
5.2 lnc-TGFB3-2:1