Transcript: lnc-TGFB3-1:2

Basic information

LNCipedia transcript ID: lnc-TGFB3-1:2 
LNCipedia gene ID: lnc-TGFB3-1
Ensembl Gene ID: ENSG00000259103
Ensembl Transcript ID: ENST00000556207
Location (hg38): chr14:75814502-75837211
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 358 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556207.1; RP11-270M14.4-002; OTTHUMT00000414467.1; NONHSAT037871
Alternative gene names: ENSG00000259103.1; RP11-270M14.4; OTTHUMG00000171612.1; AF107885.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.8579 non-coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFB3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFB3-1:2
4.0 lnc-TGFB3-1:2
4.1 lnc-TGFB3-1:2
5.0 lnc-TGFB3-1:2
5.1 lnc-PROX2-18:2
5.2 lnc-TGFB3-1:2