Transcript: lnc-TFDP2-5:1

Basic information

LNCipedia transcript ID: lnc-TFDP2-5:1 
LNCipedia gene ID: lnc-TFDP2-5
Location (hg38): chr3:141944428-141947391
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2964 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT092455; ENST00000602556.1
Alternative gene names: ENSG00000269905.1; RP11-271K21.11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.5035 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFDP2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFDP2-5:1
4.0 lnc-TFDP2-5:1
4.1 lnc-TFDP2-5:1
5.0 lnc-TFDP2-5:1
5.1 lnc-TFDP2-5:1
5.2 lnc-TFDP2-5:1