Transcript: lnc-TFAP2A-3:6

Basic information

LNCipedia transcript ID: lnc-TFAP2A-3:6 
LNCipedia gene ID: lnc-TFAP2A-3
Location (hg38): chr6:10406136-10412046
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1621 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT107678
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 719.5205 coding 
CPAT coding probability 97.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TFAP2A-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OFCC1-3:4
4.0 lnc-TFAP2A-3:6
4.1 lnc-TFAP2A-3:6
5.0 lnc-TFAP2A-3:6
5.1 lnc-ECI2-229:4
5.2 lnc-TFAP2A-3:6