Transcript: lnc-TFAP2A-14:4

Basic information

LNCipedia transcript ID: lnc-TFAP2A-14:4 
LNCipedia gene ID: lnc-TFAP2A-14
Location (hg38): chr6:10339477-10355422
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 11615 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000087326.1|ENCT00000381760.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.3815 non-coding 
CPAT coding probability 5.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFAP2A-14:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TFAP2A-14:4
5.0 lnc-TFAP2A-14:4
5.1 lnc-ECI2-227:2
5.2 lnc-TFAP2A-14:4