Transcript: lnc-TDRD3-16:1

Basic information

LNCipedia transcript ID: lnc-TDRD3-16:1 
LNCipedia gene ID: lnc-TDRD3-16
Ensembl Gene ID: ENSG00000237378
Ensembl Transcript ID: ENST00000418943
Location (hg38): chr13:63747999-63751080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418943; ENST00000418943.1; RP11-473M10.3-001; OTTHUMT00000045197.1; NONHSAT034177
Alternative gene names: ENSG00000237378; RP11-473M10.3; ENSG00000237378.1; OTTHUMG00000017023.1; ENSG00000237378.2; AL445989.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8526 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TDRD3-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL445989.1-1:1
3.1 lnc-AL445989.1-1:1
4.0 lnc-AL445989.1-1:1
4.1 lnc-AL445989.1-1:1
5.0 lnc-AL445989.1-1:1
5.1 lnc-KL-276:1
5.2 lnc-TDRD3-16:1