Transcript: lnc-TCP10L-1:1

Basic information

LNCipedia transcript ID: lnc-TCP10L-1:1 
LNCipedia gene ID: lnc-TCP10L-1
Ensembl Gene ID: ENSG00000186842
Ensembl Transcript ID: ENST00000334165
Location (hg38): chr21:32572238-32575881
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1778 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000334165; ENST00000334165.4; C21orf77-001; OTTHUMT00000139353.3; NONHSAT081734
Alternative gene names: ENSG00000186842; C21orf77; ENSG00000186842.4; OTTHUMG00000064902.3; LINC00846


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.6926 coding 
CPAT coding probability 28.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TCP10L-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCP10L-1:1
3.1 lnc-TCP10L-1:1
4.0 lnc-TCP10L-1:1
4.1 lnc-TCP10L-1:1
5.0 lnc-TCP10L-1:1
5.1 lnc-TMEM50B-17:1
5.2 lnc-TCP10L-1:1