Transcript: lnc-TCIM-2:3

Basic information

LNCipedia transcript ID: lnc-TCIM-2:3 
LNCipedia gene ID: lnc-TCIM-2
Ensembl Gene ID: ENSG00000253665
Ensembl Transcript ID: ENST00000521257
Location (hg38): chr8:40114651-40127468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 739 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521257; ENST00000521257.1; RP11-359E19.2-001; OTTHUMT00000376942.1; NONHSAT126196
Alternative gene names: ENSG00000253665; RP11-359E19.2; ENSG00000253665.1; OTTHUMG00000164044.1; AC022733.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5539 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCIM-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf4-2:4
3.1 lnc-C8orf4-2:4
4.0 lnc-C8orf4-2:4
4.1 lnc-C8orf4-2:4
5.0 lnc-C8orf4-2:4
5.1 lnc-KCNU1-64:3
5.2 lnc-TCIM-2:3