Transcript: lnc-TCFL5-5:1

Basic information

LNCipedia transcript ID: lnc-TCFL5-5:1 
LNCipedia gene ID: lnc-TCFL5-5
Location (hg38): chr20:62831883-62835730
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 766 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2162_chr20:61463234-61467082_liver
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.2487 non-coding 
CPAT coding probability 9.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCFL5-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCFL5-5:1
4.0 lnc-TCFL5-5:1
4.1 lnc-TCFL5-5:1
5.0 lnc-TCFL5-5:1
5.1 lnc-SPATA2-177:1
5.2 lnc-TCFL5-5:1