Transcript: lnc-TCF7L2-2:1

Basic information

LNCipedia transcript ID: lnc-TCF7L2-2:1 
LNCipedia gene ID: lnc-TCF7L2-2
Location (hg38): chr10:112687605-112751475
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 483 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420207.1; RP11-25C19.1-001; OTTHUMT00000050406.1; NONHSAT016407
Alternative gene names: ENSG00000234221.1; RP11-25C19.1; OTTHUMG00000019065.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -428.9506 non-coding 
CPAT coding probability 11.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCF7L2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF7L2-2:1
4.0 lnc-TCF7L2-2:1
4.1 lnc-TCF7L2-2:1
5.0 lnc-TCF7L2-2:1
5.1 lnc-SMC3-38:1
5.2 lnc-TCF7L2-2:1