Transcript: lnc-TCF7-5:2

Basic information

LNCipedia transcript ID: lnc-TCF7-5:2 
LNCipedia gene ID: lnc-TCF7-5
Ensembl Gene ID: ENSG00000271737
Ensembl Transcript ID: ENST00000606089
Location (hg38): chr5:134005147-134005562
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606089.1
Alternative gene names: ENSG00000271737.1; CTB-113I20.2; AC008608.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.5229 non-coding 
CPAT coding probability 14.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCF7-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF7-5:2
4.0 lnc-TCF7-5:2
4.1 lnc-TCF7-5:2
5.0 lnc-TCF7-5:2
5.1 lnc-PDLIM4-42:5
5.2 lnc-TCF7-5:2