Transcript: lnc-TCAIM-2:1

Basic information

LNCipedia transcript ID: lnc-TCAIM-2:1 
LNCipedia gene ID: lnc-TCAIM-2
Location (hg38): chr3:44440932-44445454
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1808 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500374; NONHSAT089321
Alternative gene names: ENSG00000245865; AC134943.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.3776 non-coding 
CPAT coding probability 12.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TCAIM-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C3orf23-2:1
3.1 lnc-C3orf23-2:1
4.0 lnc-C3orf23-2:1
4.1 lnc-C3orf23-2:1
5.0 lnc-C3orf23-2:1
5.1 lnc-KLHL40-45:1
5.2 lnc-TCAIM-2:1