Transcript: lnc-TBCCD1-4:15

Basic information

LNCipedia transcript ID: lnc-TBCCD1-4:15 
LNCipedia gene ID: lnc-TBCCD1-4
Ensembl Gene ID: ENSG00000197099
Ensembl Transcript ID: ENST00000609652
Location (hg38): chr3:186743724-186753464
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 258 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609652.1; ENST00000609652.3
Alternative gene names: ENSG00000197099.4; RP11-573D15.8; ENSG00000197099.8; AC068631.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -434.9248 non-coding 
CPAT coding probability 13.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCCD1-4:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFC4-4:5
4.0 lnc-TBCCD1-4:15
4.1 lnc-TBCCD1-4:15
5.0 lnc-TBCCD1-4:15
5.1 lnc-TBCCD1-4:15
5.2 lnc-TBCCD1-4:15