Transcript: lnc-TBC1D7-1:6

Basic information

LNCipedia transcript ID: lnc-TBC1D7-1:6 
LNCipedia gene ID: lnc-TBC1D7-1
Ensembl Gene ID: ENSG00000215022
Ensembl Transcript ID: ENST00000399446
Location (hg38): chr6:13273391-13283441
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 382 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399446.2; RP1-257A7.4-001; OTTHUMT00000039887.1; NONHSAT107797; ENST00000399446.6
Alternative gene names: ENSG00000215022.2; RP1-257A7.4; OTTHUMG00000014271.1; ENSG00000215022.3; ENSG00000215022.7; AL008729.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.8249 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D7-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GFOD1-1:1
4.0 lnc-TBC1D7-1:6
4.1 lnc-TBC1D7-1:6
5.0 lnc-TBC1D7-1:6
5.1 lnc-ECI2-261:4
5.2 lnc-TBC1D7-1:6