Transcript: lnc-TBC1D28-7:16

Basic information

LNCipedia transcript ID: lnc-TBC1D28-7:16 
LNCipedia gene ID: lnc-TBC1D28-7
Ensembl Gene ID: ENSG00000273018
Ensembl Transcript ID: ENST00000581595
Location (hg38): chr17:18513278-18528694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1471 bp
Exons: 8
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581595.1; ENST00000581595.5
Alternative gene names: ENSG00000273018.1; CTD-2303H24.2; ENSG00000273018.5; AC107983.2; ENSG00000273018.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 140.3586 coding 
CPAT coding probability 85.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TBC1D28-7:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM106A-2:18
4.0 lnc-FAM106A-2:18
4.1 lnc-FAM106A-2:18
5.0 lnc-FAM106A-2:18
5.1 lnc-B9D1-40:16
5.2 lnc-TBC1D28-7:16