Transcript: lnc-TBC1D22A-4:20

Basic information

LNCipedia transcript ID: lnc-TBC1D22A-4:20 
LNCipedia gene ID: lnc-TBC1D22A-4
Ensembl Gene ID: ENSG00000230345
Ensembl Transcript ID: ENST00000449941
Location (hg38): chr22:47860671-47862062
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 219 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029438; ENST00000449941; ENST00000449941.1; RP13-455A7.1-001; OTTHUMT00000317554.1; NONHSAT087363
Alternative gene names: XLOC_014275; linc-FAM19A5-5; ENSG00000230345; RP13-455A7.1; ENSG00000230345.1; OTTHUMG00000150319.1; AL121580.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.076 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D22A-4:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM19A5-7:1
3.1 lnc-FAM19A5-7:1
4.0 lnc-FAM19A5-7:1
4.1 lnc-TBC1D22A-4:20
5.0 lnc-TBC1D22A-4:20
5.1 lnc-GRAMD4-8:19
5.2 lnc-TBC1D22A-4:20