Transcript: lnc-TBC1D22A-4:2

Basic information

LNCipedia transcript ID: lnc-TBC1D22A-4:2 
LNCipedia gene ID: lnc-TBC1D22A-4
Ensembl Gene ID: ENSG00000224271
Ensembl Transcript ID: ENST00000426452
Location (hg38): chr22:47631690-47635624
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 642 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426452; ENST00000426452.1; RP11-191L9.4-002; OTTHUMT00000317557.1; NONHSAT087354
Alternative gene names: ENSG00000224271; RP11-191L9.4; ENSG00000224271.1; OTTHUMG00000150321.1; ENSG00000224271.5; AL117329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.3798 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D22A-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBC1D22A-4:2
3.1 lnc-TBC1D22A-4:2
4.0 lnc-TBC1D22A-4:2
4.1 lnc-TBC1D22A-4:2
5.0 lnc-TBC1D22A-4:2
5.1 lnc-GRAMD4-8:3
5.2 lnc-TBC1D22A-4:2