Transcript: lnc-TAOK3-1:6

Basic information

LNCipedia transcript ID: lnc-TAOK3-1:6 
LNCipedia gene ID: lnc-TAOK3-1
Location (hg38): chr12:118114676-118121534
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3241 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00020940
Alternative gene names: XLOC_010212; linc-VSIG10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.5055 non-coding 
CPAT coding probability 2.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAOK3-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAOK3-1:6
3.1 lnc-TAOK3-1:6
4.0 lnc-TAOK3-1:6
4.1 lnc-TAOK3-1:6
5.0 lnc-TAOK3-1:6
5.1 lnc-FBXO21-12:10
5.2 lnc-TAOK3-1:6