Transcript: lnc-TAOK1-1:3

Basic information

LNCipedia transcript ID: lnc-TAOK1-1:3 
LNCipedia gene ID: lnc-TAOK1-1
Ensembl Gene ID: ENSG00000264290
Ensembl Transcript ID: ENST00000579050
Location (hg38): chr17:29569580-29570519
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 465 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579050.1; RP11-68I3.4-001; OTTHUMT00000447810.1; NONHSAT052719
Alternative gene names: ENSG00000264290.1; RP11-68I3.4; OTTHUMG00000179724.1; AC104564.4; AC104564.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -501.5364 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAOK1-1:3 no no no no

Available literature

  1. Liu (2014), Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases., Arterioscler. Thromb. Vasc. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD13B-1:1
4.0 lnc-ANKRD13B-1:1
4.1 lnc-TP53I13-1:11
5.0 lnc-TP53I13-1:11
5.1 lnc-PIPOX-38:5
5.2 lnc-TAOK1-1:3