Transcript: lnc-TAF4-3:1

Basic information

LNCipedia transcript ID: lnc-TAF4-3:1 
LNCipedia gene ID: lnc-TAF4-3
Ensembl Gene ID: ENSG00000225106
Ensembl Transcript ID: ENST00000447909
Location (hg38): chr20:61738219-61755056
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 937 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447909.1; RP11-429E11.2-002; OTTHUMT00000079961.1; NONHSAT080687
Alternative gene names: ENSG00000225106.1; RP11-429E11.2; OTTHUMG00000032886.1; AL162457.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7964 non-coding 
CPAT coding probability 48.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TAF4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-429E11.3.1-1:1
4.0 lnc-RP11-429E11.3.1-1:1
4.1 lnc-RP11-429E11.3.1-1:1
5.0 lnc-RP11-429E11.3.1-1:1
5.1 lnc-SPATA2-142:1
5.2 lnc-TAF4-3:1