Transcript: lnc-TACR2-2:1

Basic information

LNCipedia transcript ID: lnc-TACR2-2:1 
LNCipedia gene ID: lnc-TACR2-2
Ensembl Gene ID: ENSG00000229261
Ensembl Transcript ID: ENST00000450995
RefSeq ID: NR_120648
Location (hg38): chr10:69215333-69232490
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1933 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000450995; ENST00000450995.1; RP11-227H15.4-001; OTTHUMT00000048393.1; NR_120648; NR_120648.1
Alternative gene names: ENSG00000229261; RP11-227H15.4; ENSG00000229261.1; OTTHUMG00000018372.1; AL596223.1; LOC101928994


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.6154 non-coding 
CPAT coding probability 4.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TACR2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TACR2-1:1
3.1 lnc-TACR2-2:1
4.0 lnc-TACR2-2:1
4.1 lnc-TACR2-2:1
5.0 lnc-TACR2-2:1
5.1 lnc-C10orf105-33:1
5.2 lnc-TACR2-2:1