Transcript: lnc-TACR2-1:1

Basic information

LNCipedia transcript ID: lnc-TACR2-1:1 
LNCipedia gene ID: lnc-TACR2-1
Ensembl Gene ID: ENSG00000231748
Ensembl Transcript ID: ENST00000413220
Location (hg38): chr10:69265342-69268148
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 434 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413220.1; RP11-227H15.5-001; OTTHUMT00000048394.1; NONHSAT013786
Alternative gene names: ENSG00000231748.1; RP11-227H15.5; OTTHUMG00000018373.1; AL596223.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -244.5324 non-coding 
CPAT coding probability 56.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TACR2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TACR2-1:1
4.0 lnc-TACR2-1:1
4.1 lnc-TACR2-1:1
5.0 lnc-TACR2-1:1
5.1 lnc-C10orf105-32:2
5.2 lnc-TACR2-1:1