Transcript: lnc-TAB2-1:5

Basic information

LNCipedia transcript ID: lnc-TAB2-1:5 
LNCipedia gene ID: lnc-TAB2-1
Ensembl Gene ID: ENSG00000228408
Ensembl Transcript ID: ENST00000635954
Location (hg38): chr6:149217936-149245554
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2193 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635954.1
Alternative gene names: ENSG00000228408.6; RP1-111D6.3; AL031056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.4691 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAB2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TAB2-1:5
5.0 lnc-TAB2-1:5
5.1 lnc-ULBP2-19:3
5.2 lnc-TAB2-1:5