Transcript: lnc-SZRD1-5:2

Basic information

LNCipedia transcript ID: lnc-SZRD1-5:2 
LNCipedia gene ID: lnc-SZRD1-5
Location (hg38): chr1:16341058-16343984
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2927 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA8:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.6757 non-coding 
CPAT coding probability 5.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SZRD1-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C1orf144-5:1
4.1 lnc-C1orf144-5:1
5.0 lnc-C1orf144-5:1
5.1 lnc-SZRD1-5:1
5.2 lnc-SZRD1-5:2