Transcript: lnc-SYT16-1:1

Basic information

LNCipedia transcript ID: lnc-SYT16-1:1 
LNCipedia gene ID: lnc-SYT16-1
Location (hg38): chr14:62110875-62112550
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1676 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000568344.1; RP11-355I22.7-001; OTTHUMT00000421433.2; NONHSAT037286
Alternative gene names: ENSG00000259796.1; RP11-355I22.7; OTTHUMG00000172947.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.2912 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYT16-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYT16-1:1
4.0 lnc-SYT16-1:1
4.1 lnc-SYT16-1:1
5.0 lnc-SYT16-1:1
5.1 lnc-ACTR10-66:1
5.2 lnc-SYT16-1:1