Transcript: lnc-SYNJ2BP-1:1

Basic information

LNCipedia transcript ID: lnc-SYNJ2BP-1:1 
LNCipedia gene ID: lnc-SYNJ2BP-1
Location (hg38): chr14:70326352-70416984
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 318 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000555276.1; RP11-718G2.3-001; OTTHUMT00000412471.1
Alternative gene names: ENSG00000258644.1; RP11-718G2.3; OTTHUMG00000171239.1; SYNJ2BP-COX16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 53.7802 non-coding 
CPAT coding probability 17.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SYNJ2BP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYNJ2BP-1:1
4.0 lnc-SYNJ2BP-1:1
4.1 lnc-SYNJ2BP-1:1
5.0 lnc-SYNJ2BP-1:1
5.1 lnc-ABCD4-60:4
5.2 lnc-SYNJ2BP-1:1