Transcript: lnc-SYNC-1:5

Basic information

LNCipedia transcript ID: lnc-SYNC-1:5 
LNCipedia gene ID: lnc-SYNC-1
Ensembl Gene ID: ENSG00000224409
Ensembl Transcript ID: ENST00000421619
Location (hg38): chr1:32717734-32725237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000502; ENST00000421619.1; RP11-114B7.6-001; OTTHUMT00000099440.1; NONHSAT002224
Alternative gene names: XLOC_000778; linc-SYNC-2; ENSG00000224409.1; RP11-114B7.6; OTTHUMG00000041501.1; AC114489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.2396 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNC-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYNC-2:1
3.1 lnc-SYNC-2:1
4.0 lnc-SYNC-2:1
4.1 lnc-SYNC-1:5
5.0 lnc-SYNC-1:5
5.1 lnc-RNF19B-8:4
5.2 lnc-SYNC-1:5