Transcript: lnc-SYN3-3:1

Basic information

LNCipedia transcript ID: lnc-SYN3-3:1 
LNCipedia gene ID: lnc-SYN3-3
Location (hg38): chr22:33166387-33221751
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 596 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421232.1; RP1-302D9.4-001; OTTHUMT00000315720.1; NONHSAT085000
Alternative gene names: ENSG00000244472.1; RP1-302D9.4; OTTHUMG00000150004.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3062 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYN3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYN3-3:1
4.0 lnc-SYN3-3:1
4.1 lnc-SYN3-3:1
5.0 lnc-SYN3-3:1
5.1 lnc-SYN3-3:1
5.2 lnc-SYN3-3:1