Transcript: lnc-SYK-2:1

Basic information

LNCipedia transcript ID: lnc-SYK-2:1 
LNCipedia gene ID: lnc-SYK-2
Ensembl Gene ID: ENSG00000260454
Ensembl Transcript ID: ENST00000563268
Location (hg38): chr9:90997054-91001871
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1395 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563268.1; RP11-367F23.2-001; OTTHUMT00000431075.1; NONHSAT133107
Alternative gene names: ENSG00000260454.1; RP11-367F23.2; OTTHUMG00000175788.1; AL355607.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3883 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYK-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYK-2:1
4.0 lnc-SYK-2:1
4.1 lnc-SYK-2:1
5.0 lnc-SYK-2:1
5.1 lnc-SECISBP2-37:1
5.2 lnc-SYK-2:1