Transcript: lnc-SVOP-1:1

Basic information

LNCipedia transcript ID: lnc-SVOP-1:1 
LNCipedia gene ID: lnc-SVOP-1
Location (hg38): chr12:108908365-108910002
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1585 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000511872
Alternative gene names: ENSG00000250019


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1085 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SVOP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SVOP-1:1
3.1 lnc-SVOP-1:1
4.0 lnc-SVOP-1:1
4.1 lnc-SVOP-1:1
5.0 lnc-SVOP-1:1
5.1 lnc-GPN3-31:1
5.2 lnc-SVOP-1:1