Transcript: lnc-SUMF1-6:1

Basic information

LNCipedia transcript ID: lnc-SUMF1-6:1 
LNCipedia gene ID: lnc-SUMF1-6
Ensembl Gene ID: ENSG00000230944
Ensembl Transcript ID: ENST00000443087
Location (hg38): chr3:5255535-5256761
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 585 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005729; ENST00000443087; ENST00000443087.1; AC026202.5-001; OTTHUMT00000337601.1; NONHSAT087663
Alternative gene names: XLOC_003025; linc-SUMF1-1; ENSG00000230944; AC026202.5; ENSG00000230944.1; OTTHUMG00000154903.1; AC026202.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.765 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMF1-6:1 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC018816.3.1-4:1
3.1 lnc-AC018816.3.1-5:1
4.0 lnc-AC018816.3.1-5:1
4.1 lnc-AC018816.3.1-5:1
5.0 lnc-AC018816.3.1-5:1
5.1 lnc-PRRT3-37:1
5.2 lnc-SUMF1-6:1