Transcript: lnc-STX8-3:2

Basic information

LNCipedia transcript ID: lnc-STX8-3:2 
LNCipedia gene ID: lnc-STX8-3
Ensembl Gene ID: ENSG00000262966
Ensembl Transcript ID: ENST00000574307
RefSeq ID: NR_110828
Location (hg38): chr17:9171068-9179118
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5672 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000574307.2; NR_110828; NR_110828.1
Alternative gene names: ENSG00000262966.2; RP11-85B7.2; AC005695.1; LOC101928266


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.2649 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX8-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STX8-3:2
4.0 lnc-STX8-3:2
4.1 lnc-STX8-3:2
5.0 lnc-STX8-3:2
5.1 lnc-STX8-3:2
5.2 lnc-STX8-3:2