Transcript: lnc-STX8-3:1

Basic information

LNCipedia transcript ID: lnc-STX8-3:1 
LNCipedia gene ID: lnc-STX8-3
Location (hg38): chr17:9171069-9179118
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5671 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000574307.1; RP11-85B7.2-001; OTTHUMT00000439523.1; NONHSAT145578
Alternative gene names: ENSG00000262966.1; RP11-85B7.2; OTTHUMG00000177893.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.2649 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STX8-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STX8-3:1
4.0 lnc-STX8-3:1
4.1 lnc-STX8-3:1
5.0 lnc-STX8-3:1
5.1 lnc-STX8-3:1
5.2 lnc-STX8-3:1