Transcript: lnc-STPG2-2:2

Basic information

LNCipedia transcript ID: lnc-STPG2-2:2 
LNCipedia gene ID: lnc-STPG2-2
Ensembl Gene ID: ENSG00000214559
Ensembl Transcript ID: ENST00000356499
Location (hg38): chr4:98251688-98261630
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 397 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000356499.2; RP11-323J4.1-001; OTTHUMT00000363272.1; NONHSAT097486
Alternative gene names: ENSG00000214559.3; RP11-323J4.1; OTTHUMG00000160986.1; AC019077.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.8854 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STPG2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf37-2:1
4.0 lnc-C4orf37-2:1
4.1 lnc-C4orf37-2:1
5.0 lnc-C4orf37-2:1
5.1 lnc-ADH1B-30:2
5.2 lnc-STPG2-2:2