Transcript: lnc-STON1-GTF2A1L-5:1

Basic information

LNCipedia transcript ID: lnc-STON1-GTF2A1L-5:1 
LNCipedia gene ID: lnc-STON1-GTF2A1L-5
Ensembl Gene ID: ENSG00000282890
Ensembl Transcript ID: ENST00000634588
Location (hg38): chr2:48809340-49419013
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2698 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634588.1
Alternative gene names: ENSG00000282890.1; RP11-460M2.1; AC009975.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.1655 non-coding 
CPAT coding probability 6.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STON1-GTF2A1L-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-STON1-GTF2A1L-5:1
4.1 lnc-STON1-GTF2A1L-5:1
5.0 lnc-STON1-GTF2A1L-5:1
5.1 lnc-TTC7A-30:1
5.2 lnc-STON1-GTF2A1L-5:1