Transcript: lnc-STK39-3:12

Basic information

LNCipedia transcript ID: lnc-STK39-3:12 
LNCipedia gene ID: lnc-STK39-3
Location (hg38): chr2:168422087-168456627
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1930 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000050636.1|MICT00000202503.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.7255 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STK39-3:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-STK39-3:12
5.0 lnc-STK39-3:12
5.1 lnc-LRP2-13:8
5.2 lnc-STK39-3:12