Transcript: lnc-STK39-1:1

Basic information

LNCipedia transcript ID: lnc-STK39-1:1 
LNCipedia gene ID: lnc-STK39-1
Location (hg38): chr2:168341606-168344352
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 840 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005269
Alternative gene names: XLOC_002383; linc-STK39-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.8023 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STK39-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STK39-1:2
3.1 lnc-STK39-1:1
4.0 lnc-STK39-1:1
4.1 lnc-STK39-1:1
5.0 lnc-STK39-1:1
5.1 lnc-LRP2-14:2
5.2 lnc-STK39-1:1