Transcript: lnc-STEAP1B-2:1

Basic information

LNCipedia transcript ID: lnc-STEAP1B-2:1 
LNCipedia gene ID: lnc-STEAP1B-2
Ensembl Gene ID: ENSG00000238033
Ensembl Transcript ID: ENST00000414116
RefSeq ID: NR_122075
Location (hg38): chr7:22649960-22665533
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2592 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414116; ENST00000414116.1; AC002480.2-001; OTTHUMT00000319722.1; NONHSAT119478; NR_122075; NR_122075.1
Alternative gene names: ENSG00000238033; AC002480.2; ENSG00000238033.1; OTTHUMG00000150712.1; AC002480.4; LOC401312


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.2106 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STEAP1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STEAP1B-1:1
3.1 lnc-STEAP1B-2:1
4.0 lnc-STEAP1B-2:1
4.1 lnc-STEAP1B-2:1
5.0 lnc-STEAP1B-2:1
5.1 lnc-SKAP2-64:1
5.2 lnc-STEAP1B-2:1