Transcript: lnc-STARD9-1:3

Basic information

LNCipedia transcript ID: lnc-STARD9-1:3 
LNCipedia gene ID: lnc-STARD9-1
Ensembl Gene ID: ENSG00000246283
Ensembl Transcript ID: ENST00000500850
Location (hg38): chr15:42740748-42743202
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2017 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500850.2; CTD-2036P10.3-001; OTTHUMT00000431108.1; NONHSAT140235
Alternative gene names: ENSG00000246283.2; CTD-2036P10.3; OTTHUMG00000175803.1; AC090510.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2065 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STARD9-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STARD9-1:3
4.0 lnc-STARD9-1:3
4.1 lnc-STARD9-1:3
5.0 lnc-STARD9-1:3
5.1 lnc-TMEM62-4:6
5.2 lnc-STARD9-1:3