Transcript: lnc-STARD13-2:5

Basic information

LNCipedia transcript ID: lnc-STARD13-2:5 
LNCipedia gene ID: lnc-STARD13-2
Ensembl Gene ID: ENSG00000230490
Ensembl Transcript ID: ENST00000454681
Location (hg38): chr13:33355206-33676768
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 892 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033146; ENST00000454681.2
Alternative gene names: ENSG00000230490.2; RP11-141M1.3; AL139383.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.7887 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STARD13-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STARD13-2:5
4.0 lnc-STARD13-2:5
4.1 lnc-STARD13-2:5
5.0 lnc-STARD13-2:5
5.1 lnc-CCDC169-37:9
5.2 lnc-STARD13-2:5