Transcript: lnc-STARD13-2:2

Basic information

LNCipedia transcript ID: lnc-STARD13-2:2 
LNCipedia gene ID: lnc-STARD13-2
Ensembl Gene ID: ENSG00000230490
Ensembl Transcript ID: ENST00000445227
Location (hg38): chr13:33654659-33676724
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445227; ENST00000445227.1; LINC00464-002; OTTHUMT00000044448.1; NONHSAT033153
Alternative gene names: ENSG00000230490; RP11-141M1.3; ENSG00000230490.1; LINC00464; OTTHUMG00000016714.1; ENSG00000230490.2; AL139383.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.1798 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STARD13-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STARD13-2:2
3.1 lnc-STARD13-2:2
4.0 lnc-STARD13-2:2
4.1 lnc-STARD13-2:2
5.0 lnc-STARD13-2:2
5.1 lnc-CCDC169-37:10
5.2 lnc-STARD13-2:2